DRX326300
Illumina NovaSeq 6000 paired end sequencing of SAMD00436950

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PROX1

Cell type

Cell type Class
Digestive tract
Cell type
CRC-19
NA
NA

Attributes by original data submitter

Sample

sample_name
19-8_control_prox1_PROX1
antibody
anti-PROX1 antibody (Proteintech, 11067-2-AP, Lot.00044991)
biomaterial_provider
National Cancer Center Japan
cell_line
CRC-19_8
cell_type
colorectal cancers
dev_stage
adult
disease
colon cancer
growth_condition
StemPro human embryonic stem (hESC) SFM (Gibco, A1000701) supplemented with 8 ng/mL bFGF (Gibco, PGH0261), 20 ??mol/L Y-27632 (Wako, #257-00614)
growth_protocol
maintained as spheroid cells onto ultralow attachment culture dishes
sample_type
cultured cells
temp
37
tissue
colon

Sequenced DNA Library

library_name
19-8_control_prox1_PROX1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
"QIAseq Ultralow Input Library Kit (QIAGEN, #180492)"

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50595645
Reads aligned (%)
97.6
Duplicates removed (%)
4.9
Number of peaks
462 (qval < 1E-05)

hg19

Number of total reads
50595645
Reads aligned (%)
96.9
Duplicates removed (%)
5.3
Number of peaks
347 (qval < 1E-05)

Base call quality data from DBCLS SRA