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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PROX1
wikigenes
PDBj
CellType: CRC-19
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX326300
Illumina NovaSeq 6000 paired end sequencing of SAMD00436950
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PROX1
Cell type
Cell type Class
Digestive tract
Cell type
CRC-19
NA
NA
Attributes by original data submitter
Sample
sample_name
19-8_control_prox1_PROX1
antibody
anti-PROX1 antibody (Proteintech, 11067-2-AP, Lot.00044991)
biomaterial_provider
National Cancer Center Japan
cell_line
CRC-19_8
cell_type
colorectal cancers
dev_stage
adult
disease
colon cancer
growth_condition
StemPro human embryonic stem (hESC) SFM (Gibco, A1000701) supplemented with 8 ng/mL bFGF (Gibco, PGH0261), 20 ??mol/L Y-27632 (Wako, #257-00614)
growth_protocol
maintained as spheroid cells onto ultralow attachment culture dishes
sample_type
cultured cells
temp
37
tissue
colon
Sequenced DNA Library
library_name
19-8_control_prox1_PROX1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
"QIAseq Ultralow Input Library Kit (QIAGEN, #180492)"
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
50595645
Reads aligned (%)
97.6
Duplicates removed (%)
4.9
Number of peaks
462 (qval < 1E-05)
hg19
Number of total reads
50595645
Reads aligned (%)
96.9
Duplicates removed (%)
5.3
Number of peaks
347 (qval < 1E-05)
Base call quality data from
DBCLS SRA